TESTCRUNCHER | 126876

Section I. Input Sequence

1
MGSGLNKFIY
11
VGLVISQLLT
21
LAAYVVVTAG
31
AALLQKKANT
41
LTLFDTQEGI
51
DKYTPVYKEV
61
FTATTYIIAY
71
PQQPQYQFQY
81
QWWIIQFELF
91
VFLLTAACTV
101
FPSIIKRMRP
111
VALTFIASAL
121
VLVMDNINAI
131
FFLLRNETAK
141
AVFDDYRIAT
151
AQAGLIMVGV
161
ANGLTIFFLG
171
SYDAEESHAM
181
PNVHVTSDGA
191
TKVSNSLVPR
201

 

Section II. Predicted Contact and Distance Matrices

[-] Click to view the predicted contact map of the input sequence
Status
Current status:
Complete
Submitted on:
2018-11-22 17:28:34
Scheduled on:
2018-11-24 16:49:02
Finished on:
2018-11-24 20:16:39
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Hover mouse over a position to display prediction for a specific residue pair.
indices: (0,0)prob:0.0000
Download Predicted Contact Map
the contact image.
To view the contact image.
the contact result file.
Open the result file using a text editor such as WordPad (Windows) or vi (Linux/Unix/MacOS).
Download Detailed Prediction Results
detailed prediction results.
To open .zip files, you may use 7-zip for Windows or unzip for Linux/Unix/MacOS.

[+] Click to view the predicted inter-residue distance matrix of the input sequence

Section III. Predicted 3D Models and Local Structures (see the result by clicking on it)

[+] Click to view the predicted local structure property of the sequence
[+] Click to view the predicted 3D model(s) of the input sequence


Section IV. Multiple Sequence Alignment (See MSAViewer for help)

[+] Click to view the multiple sequence alignment (display up to 5001 sequences)


Please cite the following method papers:
1. Sheng Wang, Siqi Sun and Jinbo Xu. Analysis of deep learning methods for blind protein contact prediction in CASP12. PROTEINS, 2017
2. Sheng Wang, Zhen Li, Yizhou Yu and Jinbo Xu. Folding Membrane Proteins by Deep Transfer Learning. Cell Systems, 2017
3. Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang and Jinbo Xu. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLoS Computational Biology, 2017.
4. Sheng Wang, Wei Li, Renyu Zhang, Shiwang Liu and Jinbo Xu. CoinFold: a web server for protein contact prediction and contact-assisted protein folding. Nucleic Acids Research, 2016.
5. Jianzhu Ma, Sheng Wang, Zhiyong Wang and Jinbo Xu. Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning. RECOMB 2015, Lecture Notes in Computer Science, Volume 9029, 2015, pp 218-221. Also appears at Bioinformatics (2015).